Monday, December 24, 2012

Tests for coagulation disorders


Tests for coagulation disorders:

Prothombin Time (PT):
PT is the time in seconds that takes the blood to clot. This test result can vary depending on laboratory system used. A longer PT means that the patient’s blood is taking longer to clot.

Fig. BD Vacuitainer tube with Sodium citrate (Sky Blue top)

Activated Partial thromboplastin time (APTT):
APTT is a measure of how well the patient’s blood would clot. A sample of blood is “clot activated” and the time taken to clot is measured in seconds. Like the PT a longer aPTT means that clotting will generally take longer.

Sunday, December 23, 2012

Prokaryotic Transcription: step by step


Initiation:
Begins with the binding of DNA dependent RNAP holoenzyme to promoter in template DNA.

Fig. TATA sequence (Source : Lehninger's Biochemistry, 4th Edition)
There are variations in nucleotide sequences in these promoter sites which provide differential gene expression.

Alpha subunit binds to UP element and sigma factor covers -35 to -10 region.

Binding of RNAP to -35 forms closed complex whereas to -10 region forms open complex, due to the presence of AT region which has low Tm and also these sites have low nucleosomal density.


RNA Metabolism : Basics



RNA METABOLISM

RNA is the only macromolecule having role in storage and transmission of information and in catalysis (ribozyme).

Fig. Classes of Eukaryotic RNA (Source: Harper's Illustrated Biochemistry, 28th Edition)

DNA-Dependent RNA synthesis

Synthesis by RNA Polymerase (RNAP)  that adds NTPs to 3’-OH end using one strand of DNA as template, similar to DNA Polymerase (DNAP). RNA formed is similar to coding strand.

Elongated from 5’ to 3’ end with reading from 3’ to 5’ end on DNA.

Tuesday, December 18, 2012

Cross sectional studies


What is research ?
   
It is a scientific process of Systematic collection of data, Compilation of data, analysis of data to convert in to information for suitable interpretation to get the answer of the question

Why research is needed in health sector ?

To identify:

  • Health problems along with their magnitude to prioritize the diseases for action and then to manage  by initiating curative action
  • Risk behavior or causal factors to restrict  partially or fully for further addition by preventive action


Need of research in health sector
6 Ws are the guide for research:

  • W: who are the affected people (age, gender, race)
  • W: where are the affected people (rural/urban, geographical location)
  • W: when are affected (seasonal, cyclic)
  • W: why are affected (cause)
  • W: what action is required (intervention)
  • W: what happened after the action (evaluation of intervention)


Answer of 6 Ws are by different study designs



Cross sectional studies

  • Cross sectional studies are those carried at a point in time or over a short period of time
  • Cross sectional studiesa are useful for both describing the situation in terms of magnitude (prevalence) of disease and comparing (to measure the association), but causal association can not be established
  • While to assess causal association, the cohort study design and case control (for rare diseases) study designs are followed.

Cross-sectional studies measure:

The prevalence of not only disease but also the health related behavior or characteristics of people in a population e.g. the wearing of seat belts or participation in exercise

  • Its result can often suggest causative or risk factors associated with particular illness or behavior
  • For instance, the causal relationship between cataracts and vitamin status was originally investigated through a cross-sectional study (Coggon et al., 2003). 
  • Cross-sectional studies, need not always to investigate the whole population: a sample is usually sufficient, provided that the sample is representative and adequate in size.
  • Cross-sectional studies are useful in planning public health interventions.
Descriptive Cross-sectional survey
are used to measure the prevalence of disease in a population

Example:

  • Repetition of these surveys can be very useful in finding out whether changes are occurring over time – called monitoring or surveillance

Analytical Cross Sectional Surveys
Obtained data on prevalence of outcome and exposure are compared for differences in outcome between exposed and unexposed

  • A defined population at a particular time is considered
  • Exposure and outcomes are determined at the same point in time
  • Analytical Cross Sectional Surveys


Tuesday, December 11, 2012

What is Hypersensitivity ?


HYPERSENSITIVITY

1. Basic concepts

Definition:
Hypersensitivity (HS) reactions are  harmful antigen-specific immune responses  which produce tissue injury and dysfunction.

Allergen:the antigens that give rise to immediate HS.

Fig. Allergy
Atopy:

Familial tendency to make IgE more frequently against the common environmental substances to which most of the population is not reactive.
 
Fig. Types of Hypersensitivity

































Type I  hypersensitivity

Characteristics:

• Occur and resolve quickly
• Mediated by serum IgE
• Systemic and regional tissue dysfunction
• Genetic predisposition

Components and cells:

  1. Allergen :
    • pollen, dust mite, insects etc
    • selectively activate CD4+Th2 cells and B cell
  2. IgE and its production
    • IgE: mainly produced by mucosal B cells in the lamina propria 
    • IL-4 is essential to switch B cells to IgE production  
  3. High affinity receptor of the IgE on mast cell and basophi
  4. Eosinophil
Factors which stimulate Mast cells
• Cross linking of IgE by Allergen
• C3a, C4a, C5a receptor present in mast cell
• Drugs like Codeine and Morphine
• Venon (Snake bite- Mellitin), Bee sting, Ant Sting
• Physical agents like cold, heat, physical trauma
• Strong sun light







 Production of IgE Ab

  • In individuals who are prone to allergies (Atopic persons) encounter with some Ag activation of TH2 cells--->production of IgE Ab
  • IL-4 and IL-13 stimulate B lymphocytes specific for the foreign Ags to switch to IgE producing  plasma cells.
  • Strong genetic basis
Both Genetics and the Environment play a significant roles in determining who has allergies and which kind of allergy.

Certain allergies and autoimmunity can be mapped to specific gene loci.

Activation of mast cells and secretion of mediators


  1. Priming stage/Sensitizing
    • IgE Ab produced in response to an allergen binds to high affinity Fc receptors specific for the ε heavy chain on mast cell
  2. Activating stage
    • When mast cells sensitized by IgE are exposed to the allergen, the cells are activated to secrete their mediators 
  3. Effect stage:
    • Vasoactive amines and proteases—from granules, products of arachidonic acid metabolism, and cytokines. (Immediate and late phase) 
Immediate/early phase : mediated by histamine, start within seconds, last several hours.
Late phase: Mediated by new-synthesized lipid mediators, take up 8-12 hours to develop, last several days 

Sequence of events in immediate HS:

  • Intitiated by the introduction of an allergen, which stimulates Th2 reactions and IgE production. 
  • IgE binds to Fc receptors (FCERI) on mast cells, and subsequent exposure to the allergen activates the mast cells to secret the mediators that are responsible for the pathologic reactions of immediate HS.


















Schematic diagrams of the high-affinity FcRI and low-affinity FcRII receptors that bind the Fc region of IgE.

Each gamma-chain of the high-affinity receptor contains an ITAM, a motif also present in the Ig-/Ig- heterodimer of the B-cell receptor and in the CD3 complex of the T-cell receptor.






The low-affinity receptor is unusual because it is oriented in the membrane with its NH -terminus
directed toward the cell interior and its COOH-terminus directed toward the extracellular space.















Mast cell activation:


 Biochemical events in mast cell activation:
 

  • Cross linking of IgE on a mast cell by an allergen stimulates phosphorylation of ITAM (Immunoreceptor tyrosine based activation motifs) in the signalling chains of the IgE Fc receptor, which then initiates multiple signaling pathways. These signaling pathways stimulate the release of mast cell granule contents (amines, proteases). 
  • The synthesis of arachidonic acid metabolites (PG, LTs) and the synthesis of various cytokines. These mast cell mediators stimulate the various reactions of immediate HS.   

Clinical Syndrome:

 Diagnosis

  • Skin prick test
  • RAST (Radio allergo Immuno sorbent test)
    • Used to detect specific IgE against a particular Ag



Related Posts Plugin for WordPress, Blogger...